SOFTWARE

GETTING STARTED

xcode

cygwin

ALIGNMENT

bwa

bowtie

tophat

METAGENOMICS

MetaPhlAn

BLAST

BLAST Tutorial

CHIP-SEQ

chipseeqer

macs

peakseq

findpeaks

METHYL-SEQ

methyl-kit

RNA-SEQ

cufflinks

cummeRbund

ppbs

edgeR

---

Tri-Institutional MD-PhD Program

Department of Physiology and Biophysics