Physiology, the oldest and most fundamental of the basic medical sciences, is the science of the function of living organisms, including humans. In the Department of Physiology and Biophysics, our techniques are modern and are constantly evolving, our questions are immediate, but our basic quest remains constant. As Physiologists we ask how biological processes - from molecules to organisms - perform their functions. As Biophysicists we ask how these processes - and life itself - build upon the laws of mathematics, physics, and chemistry.

Recent publications by members of the Department of Physiology and Biophysics:
  1. Razavi AM, Khelashvili G, Weinstein H. A Markov State-based Quantitative Kinetic Model of Sodium Release from the Dopamine Transporter Nat Sci RepJan 2017 PMID: 28059145
  2. Sahai MA, Davidson C, Khelashvili G, Barrese V, Dutta N, Weinstein H, Opacka-Juffry J. Combined in vitro and in silico approaches to the assessment of stimulant properties of novel psychoactive substances – The case of the benzofuran 5-MAPB J pnpbpNov 2016 PMID: 27890676
  3. Cuendet MA, Weinstein H, LeVine MV. The Allostery Landscape: Quantifying Thermodynamic Couplings in Biomolecular Systems JCTCNov 2016 PMID: 27766843
  4. Khelashvili G, Schmidt SG, Shi L, Javitch JA, Gether U, Loland CJ, Weinstein H. Conformational Dynamics on the Extracellular Side of LeuT Controlled by Na+ and K+ Ions and the Protonation State of Glu290 J Biol ChemSep 2016 PMID: 27474737
  5. Veerappan A, Thompson M, Savage AR, Silverman ML, Chan WS, Sung B, Summers B, Montelione KC, Benedict P, Groh B, Vicencio AG, Peinado H, Worgall S, Silver RB. Mast cells and exosomes in hyperoxia-induced neonatal lung disease. AJPJun 2016 PMID: 27130530
  6. Zhao Y, Fay F, Hak S, Manuel Perez-Aguilar J, Sanchez-Gaytan BL, Goode B, Duivenvoorden R, de Lange Davies C, Bjørkøy A, Weinstein H, Fayad ZA, Pérez-Medina C, Mulder WJ. Augmenting drug-carrier compatibility improves tumour nanotherapy efficacy. Nat CommunApr 2016 PMID: 27071376
  7. Johner N, Harries D, Khelashvili G. Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulations BMC BioinfApr 2016 PMID: 27071656
  8. LeVine MV, Cuendet MA, Khelashvili G, Weinstein H. Allosteric Mechanisms of Molecular Machines at the Membrane: Transport by Sodium-Coupled Symporters Chem RevFeb 2016 PMID: 26892914
  9. LeVine MV, Khelashvili G, Shi L, Quick M, Javitch JA, Weinstein H. Role of Annular Lipids in the Functional Properties of Leucine Transporter LeuT Proteomicelles BiochemFeb 2016 PMID: 26811944
  10. Arango-Lievano M, Sensoy O, Borie A, Corbani M, Guillon G, Sokoloff P, Weinstein H, Jeanneteau F. A GIPC1-Palmitate Switch Modulates Dopamine Drd3 Receptor Trafficking and Signaling Mol Cell BiolJan 2016 PMID: 26787837
  11. Stolzenberg S, Michino M, LeVine MV, Weinstein H, Shi L. Computational approaches to detect allosteric pathways in transmembrane molecular machines Biochim Biophys Acta.Jan 2016 PMID: 26806157
  12. Khelashvili G, Stanley N, Sahai MA, Medina J, LeVine MV, Shi L, De Fabritiis G, Weinstein H. Spontaneous Inward Opening of the Dopamine Transporter Is Triggered by PIP2‐Regulated Dynamics of the N‐Terminus ACS Chem NeurosciNov 2015 PMID: 26255829
  13. Billesbølle CB, Krüger MB, Shi L, Quick M, Li Z, Stolzenberg S, Kniazeff J, Gotfryd K, Mortensen JS, Javitch JA, Weinstein H, Loland CJ, Gether U. Substrate-induced Unlocking of the Inner Gate Determines the Catalytic Efficiency of a Neurotransmitter:Sodium Symporter J Biol ChemOct 2015 PMID: 26363074
  14. Khelashvili G, Weinstein H. Functional mechanisms of neurotransmitter transporters regulated by lipid-protein interactions of their terminal loops Biochim Biophys Acta.Sep 2015 PMID: 25847498
  15. Karlsen ML, Thorsen TS, Johner N, Ammendrup-Johnsen I, Erlendsson S, Tian X, Simonsen JB, Høiberg-Nielsen R, Christensen NM, Khelashvili G, Streicher W, Teilum K, Vestergaard B, Weinstein H, Gether U, Arleth L, Madsen KL. Structure of Dimeric and Tetrameric Complexes of the BAR Domain Protein PICK1 Determined by Small-Angle X-Ray Scattering StructureJul 2015 PMID: 26073603
  16. Lee MM, Arrenberg AB, Aksay ER. A structural and genotypic scaffold underlying temporal integration J NeurosciMay 2015 PMID: 25995475
  17. LeVine MV, Weinstein H. AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems EntropyMay 2015 PMID: 26594108
  18. Khelashvili G, Doktorova M, Sahai MA, Johner N, Shi L, Weinstein H. Computational modeling of the N-terminus of the human dopamine transporter and its interaction with PIP2-containing membranes ProteinsMay 2015 PMID: 25739722
  19. Stolzenberg S, Quick M, Zhao C, Gotfryd K, Khelashvili G, Gether U, Loland CJ, Javitch JA, Noskov S, Weinstein H, Shi L. Mechanism of the Association between Na+ Binding and Conformations at the Intracellular Gate in Neurotransmitter:Sodium Symporters J Biol ChemMay 2015 PMID: 25869126
  20. Sensoy O, Weinstein H. A mechanistic role of Helix 8 in GPCRs: Computational modeling of the dopamine D2 receptor interaction with the GIPC1–PDZ-domain Biochim Biophys Acta.Apr 2015 PMID: 25592838
  21. Kulig W, Olżyńska A, Jurkiewicz P, Kantola AM, Komulainen S, Manna M, Pourmousa M, Vazdar M, Cwiklik L, Rog T, Khelashvili G, Harries D, Telkki VV, Hof M, Vattulainen I, Jungwirth P. Cholesterol under oxidative stress—How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols Free Radic Biol Med. Mar 2015 PMID: 25795515
  22. Daie K, Goldman MS, Aksay ERF. Spatial patterns of persistent neural activity vary with the behavioral context of short-term memory NeuronFeb 2015 PMID: 25661184
  23. Akyuz N, Georgieva ER, Zhou Z, Stolzenberg S, Cuendet MA, Khelashvili G, Altman RB, Terry DS, Freed JH, Weinstein H, Boudker O, Blanchard SC. Transport domain unlocking sets the uptake rate of an aspartate transporter NatureFeb 2015 PMID: 25652997
  24. Johner N, Harries D, Khelashvili G. Curvature and Lipid Packing Modulate the Elastic Properties of Lipid Assemblies: Comparing HII and Lamellar Phases J. Phys. Chem. Lett.Nov 2014 PMID: 26278954
  25. Perez-Aguilar JM, Shan J, LeVine MV, Khelashvili G, Weinstein H. A Functional Selectivity Mechanism at the Serotonin-2A GPCR Involves Ligand-Dependent Conformations of Intracellular Loop 2 J Am Chem SocNov 2014 PMID: 25314362
  26. Handschuh K, Feenstra J, Koss M, Ferretti E, Risolino M, Zewdu R, Sahai MA, Bénazet JD, Peng XP, Depew MJ, Quintana L, Sharpe J, Wang B, Alcorn H, Rivi R, Butcher S, Manak JR, Vaccari T, Weinstein H, Anderson KV, Lacy E, Selleri L. ESCRT-II/Vps25 constrains digit number by endosome-mediated selective modulation of FGF-SHH signaling. Cell RepOct 2014 PMID: 25373905
  27. Borre L, Andreassen TF, Shi L, Weinstein H, Gether U. The second sodium site in the dopamine transporter controls cation permeation and is regulated by chloride J Biol ChemSep 2014 PMID: 25063810
  28. Dehnes Y, Shan J, Beuming T, Shi L, Weinstein H, Javitch J. Conformational changes in dopamine transporter intracellular regions upon cocaine binding and dopamine translocation. Neurochemistry InternationalJul 2014 PMID: 24576496
  29. Hansen FH, Skjørringe T, Yasmeen S, Arends NV, Sahai MA, Erreger K, Andreassen TF, Holy M, Hamilton PJ, Neergheen V, Karlsborg M, Newman AH, Pope S, Heales SJ, Friberg L, Law I, Pinborg LH, Sitte HH, Loland C, Shi L, Weinstein H, Galli A, Hjermind LE, Møller LB, Gether U. Missense dopamine transporter mutations associate with adult parkinsonism and ADHD J Clin InvestJul 2014 PMID: 24911152
  30. Mondal S, Khelashvili G, Weinstein H. Not Just an Oil Slick: How the Energetics of Protein-Membrane Interactions Impacts the Function and Organization of Transmembrane Proteins Biophys JJun 2014 PMID: 24896109
  31. Hamilton PJ, Belovich AN, Khelashvili G, Saunders C, Erreger K, Javitch JA, Sitte HH, Weinstein H, Matthies HJ, Galli A. PIP2 regulates psychostimulant behaviors through its interaction with a membrane protein Nat Chem BiolJun 2014 PMID: 24880859
  32. Kazmier K, Sharma S, Quick M, Islam SM, Roux B, Weinstein H, Javitch J, McHaourab H. Conformational dynamics of ligand-dependent alternating access in LeuT Nat Struct Mol BiolMay 2014 PMID: 24747939
  33. Verdon G, Oh S, Serio RN, Boudker O. Coupled ion binding and structural transitions along the transport cycle of glutamate transporters ElifeMay 2014 PMID: 24842876
  34. LeVine M, Weinstein H. NbIT - A New Information Theory-Based Analysis of Allosteric Mechanisms Reveals Residues that Underlie Function in the Leucine Transporter LeuT PLoS Comp BiolMay 2014 PMID: 24785005
  35. LeVine M,Perez-Aguilar JM,Weinstein H. N-body Information Theory (NbIT) Analysis of Rigid- Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor Proceedings IWBBIO Apr 2014
  36. Johner N, Mondal S, Morra G, Caffrey M,Weinstein H, and Khelashvil G. Protein and Lipid Interactions Driving Molecular Mechanisms of in meso Crystallization. J Am Chem SocFeb 2014 PMID: 24494670
  37. Khelashvili G, Johner N, Zhao G, Harries D, Scott H.L. Molecular origins of bending rigidity in lipids with isolated and conjugated double bonds: The effect of cholesterol Chem Phys LipJan 2014 PMID: 24394210
  38. Mondal S, Khelashvili G, Johner N, and Weinstein H. How the Dynamic Properties and Functional Mechanisms of GPCRs Are Modulated by Their Coupling to the Membrane Environment Adv Exp Med BiolJan 2014 PMID: 24158801