Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F. Beyond tissueInfo: functional prediction using tissue expression profile similarity searches. Nucleic Acids Res. 2008 Jun;36(11):3728-37.

Niv MY, Skrabanek L, Roberts RJ, Scheraga HA, Weinstein H. Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints. Proteins. 2008 May 1;71(2):631-40.

Skrabanek L, Niv MY. Scan2S: Increasing the precision of PROSITE pattern motifs using secondary structure constraints. Proteins. 2008 Mar 4. [Epub ahead of print].

Skrabanek L, Saini HK, Bader GD, Enright AJ. Computational prediction of protein-protein interactions. Mol Biotechnol. 2008 Jan;38(1):1-17.

Skrabanek L, Murcia M, Bouvier M, Devi L, George SR, Lohse ML, Milligan G, Neubig R, Palczewski K, Parmentier M, Pin JP, Vriend G, Javitch JA, Campagne F, Filizola M. Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base. BMC Bioinformatics 2007, 8:177

Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL. eIF4E is a central node of an RNA regulon that governs cellular proliferation. J Cell Biol. 2006 Nov 6;175(3):415-26.

Niv MY, Skrabanek L, Filizola M and Weinstein H.  Modeling activated states of GPCRs: The rhodopsin template. J Comput Assist Mol Design, 2006 Jul-Aug;20(7-8):437-48.

Campagne F and Skrabanek L. Mining expressed sequence tags identifies cancer markers of clinical interest. BMC Bioinformatics. 2006, 7:481

Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL. eIF4E promotes nuclear export of cyclin D1 mRNAs via an element in the 3'UTR. J Cell Biol. 2005 Apr 25;169(2):245-56.

Enright AJ, Skrabanek L, Bader GD. Computer Prediction of Protein-Protein Interactions. In The Proteomics Handbook, Ed John Walker, Humana Press. March 2005.

Beuming T, Skrabanek L, Niv MY, Mukherjee P. PDZBase: a protein-protein interaction database for PDZ-domains. Bioinformatics. 2004 Oct 28

Dutheil N, Yoon-Robarts M, Ward P, Henckaerts E, Skrabanek L, Berns KI, Campagne F, Linden RM. Characterization of the mouse adeno-associated virus AAVS1 ortholog. J Virol. 2004 Aug;78(16):8917-21.

Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Quantitative information management for the biochemical computation of cellular networks. Sci STKE. 2004 248:PL11.

Filizola M, Visiers I, Skrabanek L, Campagne F, Weinstein H. Functional mechanisms of GPCRs in a structural context. In Molecular Neuropharmacology, Strategies and Methods, Eds., A. Schousboe and H. Bräuner-Osborne, Humana Press. Dec. 2003.

Ban Y, Greenberg DA, Concepcion E, Skrabanek L, Villanueva R, Tomer Y. Amino acid substitutions in the thyroglobulin gene are associated with susceptibility to human and murine autoimmune thyroid disease. Proc Natl Acad Sci U S A. 2003. 100(25):15119-15124.

Skrabanek L, Campagne F, Weinstein H. Building protein diagrams on the web with the residue-based diagram editor RbDe. 2003. Nucleic Acids Res. Jul 1;31(13):3856-8.

Topisirovic I, Culjkovic B, Cohen N, Perez JM, Skrabanek L, Borden KLB. The proline-rich homeodomain protein, PRH, is a tissue-specific inhibitor of eIF4E-dependent cyclin D1 mRNA transport and growth. 2003. EMBO J. 22(3):1-15.

Skrabanek L and Campagne F. TissueInfo: high-throughput identification of tissue expression profiles and specificity. 2001. Nucleic Acids Res. 29(21):e102-110.

McLysaght, A., Enright, A., Skrabanek, L. and Wolfe, K. H. Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human., 2000. Yeast 17: 22-36.

Skrabanek, L. and Wolfe, K. H. Eukaryote genome duplication - where's the evidence? Curr. Opin. Genet. Dev., 1998. 8: 694-700.