Lucy (Luce) Skrabanek

Publications:
  1. Ban Y, Tozaki T, Taniyama M, Skrabanek L, Nakano Y, Ban Y, Hirano T. Multiple SNPs in intron 41 of thyroglobulin gene are associated with autoimmune thyroid disease in the Japanese population PLoS OneMay 2012 PMID: 22662162
  2. Stefan M, Jacobson EM, Huber AK, Greenberg DA, Li CW, Skrabanek L, Conception E, Fadlalla M, Ho K, Tomer Y. Novel variant of thyroglobulin promoter triggers thyroid autoimmunity through an epigenetic interferon alpha-modulated mechanism J Biol ChemSep 2011 PMID: 21757724
  3. Lugthart S, Figueroa ME, Bindels E, Skrabanek L, Valk PJ, Li Y, Meyer S, Erpelinck-Verschueren C, Greally J, Löwenberg B, Melnick A, Delwel R. Aberrant DNA hypermethylation signature in acute myeloid leukemia directed by EVI1 BloodJan 2011 PMID: 20855866
  4. Khelashvili G, Dorff K, Shan J, Camacho-Artacho M, Skrabanek L, Vroling B, Bouvier M, Devi LA, George SR, Javitch JA, Lohse MJ, Milligan G, Neubig RR, Palczewski K, Parmentier M, Pin JP, Vriend G, Campagne F, Filizola M. GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base BioinfJul 2010 PMID: 20501551
  5. Figueroa ME, Lugthart S, Li Y, Erpelinck-Verschueren C, Deng X, Christos PJ, Schifano E, Booth J, van Putten W, Skrabanek L, Campagne F, Mazumdar M, Greally JM, Valk PJ, Löwenberg B, Delwel R, Melnick A. DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia Cancer CellJan 2010 PMID: 20060365
  6. Jacobson EM, Yang H, Menconi F, Wang R, Osman R, Skrabanek L, Li CW, Fadlalla M, Gandhi A, Chaturvedi V, Smith EP, Schwemberger S, Osterburg A, Babcock GF, Tomer Y. Employing a Recombinant HLA-DR3 Expression System to Dissect Major Histocompatibility Complex II-Thyroglobulin Peptide Dynamism J Biol ChemDec 2009 PMID: 19776016
  7. Figueroa ME, Skrabanek L, Li Y, Jiemjit A, Fandy TE, Paietta E, Fernandez H, Tallman MS, Greally JM, Carraway H, Licht JD, Gore SD, Melnick A. MDS and secondary AML display unique patterns and abundance of aberrant DNA methylation BloodOct 2009 PMID: 19652201
  8. Topisirovic I, Siddiqui N, Orolicki S, Skrabanek LA, Tremblay M, Hoang T, Borden KL. Stability of Eukaryotic Translation Initiation Factor 4E mRNA Is Regulated by HuR, and This Activity Is Dysregulated in Cancer Mol Cell BiolMar 2009 PMID: 19114552
  9. Figueroa ME, Wouters BJ, Skrabanek L, Glass J, Li Y, Erpelinck-Verschueren CA, Langerak AW, Löwenberg B, Fazzari M, Greally JM, Valk PJ, Melnick A, Delwel R. Genome wide epigenetic analysis delineates a biologically distinct immature acute leukemia with myeloid/T-lymphoid features BloodJan 2009 PMID: 19168792
  10. Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F. Beyond tissueInfo: functional prediction using tissue expression profile similarity searches NARMay 2008 PMID: 18483083
  11. Skrabanek L, Niv MY. Scan2S: Increasing the precision of PROSITE pattern motifs using secondary structure constraints ProteinsFeb 2008 PMID: 18320586
  12. Niv MY, Skrabanek L, Roberts RJ, Scheraga HA, Weinstein H. Identification of GATC- and CCGGrecognizing Type II REases and their putative specificity-determining positions using Scan2S—a novel motif scan algorithm with optional secondary structure constraints ProteinsOct 2007 PMID: 17972284
  13. Skrabanek L, Saini HK, Bader GD, Enright AJ. Computational Prediction of Protein–Protein Interactions Mol BiotechnolAug 2007 PMID: 18095187
  14. Skrabanek L, Murcia M, Bouvier M, Devi L, George SR, Lohse MJ, Milligan G, Neubig R, Palczewski K, Parmentier M, Pin JP, Vriend G, Javitch JA, Campagne F, Filizola M. Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base BMC BioinfMay 2007 PMID: 17537266
  15. Niv MY, Skrabanek L, Filizola M, Weinstein H. Modeling activated states of GPCRs: the rhodopsin template J Comput Aided Mol DesNov 2006 PMID: 17103019
  16. Campagne F, Skrabanek L. Mining expressed sequence tags identifies cancer markers of clinical interest BMC BioinfNov 2006 PMID: 17078886
  17. Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL. eIF4E is a central node of an RNA regulon that governs cellular proliferation JCBOct 2006 PMID: 17074885
  18. Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL. eIF4E promotes nuclear export of cyclin D1 mRNAs via an element in the 3' UTR JCBApr 2005 PMID: 15837800
  19. Computational Prediction of Protein–Protein Interactions The Proteomics Protocols HandbookJan 2005
  20. Beuming T, Skrabanek L, Niv MY, Mukherjee P, Weinstein H. PDZBase: a protein–protein interaction database for PDZ-domains BioinfOct 2004 PMID: 15513994
  21. Dutheil N, Yoon-Robarts M, Ward P, Henckaerts E, Skrabanek L, Berns KI, Campagne F, Linden RM. Characterization of the Mouse Adeno-Associated Virus AAVS1 Ortholog J VirolAug 2004 PMID: 15280500
  22. Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Quantitative Information Management for the Biochemical Computation of Cellular Networks JCBAug 2004 PMID: 15340175
  23. Ban Y, Greenberg DA, Concepcion E, Skrabanek L, Villanueva R, Tomer Y. Amino acid substitutions in the thyroglobulin gene are associated with susceptibility to human and murine autoimmune thyroid disease PNASDec 2003 PMID: 14657345
  24. Skrabanek L, Campagne F, Weinstein H. Building protein diagrams on the web with the residue-based diagram editor RbDe NARApr 2003 PMID: 12824436
  25. Topisirovic I, Culjkovic B, Cohen N, Perez JM, Skrabanek L, Borden KL. The proline-rich homeodomain protein, PRH, is a tissue-specific inhibitor of eIF4E-dependent cyclin D1 mRNA transport and growth EMBO JFeb 2003 PMID: 12554669
  26. Skrabanek L, Campagne F. TissueInfo: high-throughput identification of tissue expression profiles and specificity NARSep 2001 PMID: 11691939
  27. McLysaght A, Enright AJ, Skrabanek L, Wolfe KH. Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human YeastFeb 2000 PMID: 10797599
  28. Skrabanek L, Wolfe KH. Eukaryote genome duplication — where’s the evidence? Curr Op Gen DevlDec 1998 PMID: 9914206