| Publications
M.Y . Niv*, D.R. Ripoll, J.A. Vila, A. Liwo, E. S. Vanamee, A. K. Aggarwal, H. Weinstein and H. A. Scheraga, Topology of Type II REases revisited; structural classes and the common conserved core, Nucleic Acids Research 2007 Mar 1-11 [PDF] *corresponding author
M.Y. Niv, L. Skrabanek, M. Filizola and H. Weinstein, Modeling activated states of GPCRs: The rhodopsin template, JCAMD 2006 Jul-Aug;20(7-8):437-48. [PDF] [Supplementary Materials]
M.Y. Niv and H. Weinstein, Flexible docking procedure for the exploration of peptides binding selectivity to PDZ structures and homology models, JACS 127, pp. 14072-14079 (2005) [PDF]
S.D. Wexler, M.Y. Niv, S. Wexler, and H. Reuveni, Sequence-based protein kinase inhibition: applications for drug development, Biotechniques 39, pp. 575-576 (2005). [PDF]
K. Madsen, T. Beuming, M.Y. Niv, V. Chang, K.K. Dev, H. Weinstein and U. Gether, Molecular determinants for the complex binding specificity of the PDZ domain in PICK1, J. Biol. Chem. 280, pp. 20539-48 (2005). [PDF]
T. Beuming, L. Skrabanek, M.Y. Niv, P. Murherjee and H. Weinstein PDZBase: A protein-protein interaction database for PDZ-domains, Bioinformatics (2004). [PDF]
M.Y. Niv, H. Rubin, J. Cohen, L. Tsirulnikov, T. Licht, A. Peretzman-Shemer, E. Cna'an, A. Tartakovsky, I. Stein, S. Albeck, I. Weinstein, M. Goldenberg-Furmanov, D. Tobi, E. Cohen, M. Laster, S.A. Ben-Sasson , H. Reuveni, Sequence-based protein kinase inhibitors applicable for therapeutics and target identification, J. Biol. Chem., 279, pp. 1242-55, (2004). [PDF]
M. Bargheer, M.Y. Niv, R.B. Gerber and N. Schwentner, Ultrafast Solvent-Induced Spin-Flip and Non-Adiabatic coupling: ClF in Argon Solids, Phys. Rev. Lett. 89, pp.108301-4 (2002)
A. Cohen, M.Y. Niv and R.B. Gerber, Formation of novel rare-gas containing molecules by molecular photodissociation in clusters, Faraday Discuss. 118, pp.269-280 (2001)
G. Chaban, R.B. Gerber, M.V. Korolkov, J. Manz, M.Y. Niv and B. Schmidt, Photodissociation Dynamics of Molecular Fluorine in an Argon Matrix: Control of Cage Exit Dynamics by Ultrashort Laser Pulses, J. of Phys. Chem. A 105, pp. 2770-2782 (2001).
M.Y. Niv, M. Bargheer and R.B. Gerber, Photodissociation and Recombination of F2 molecule in Ar54 cluster: Nonadiabatic Molecular Dynamics Simulations, J. Chem. Phys., 113, p6660 (2000).
R.B. Gerber, M.V. Korolkov, J. Manz, M.Y. Niv and B. Schmidt, A reflection principle for the control of molecular photodissociation in solids: Model simulation for F2 in Ar, Chem. Phys. Lett., 327, p76 (2000).
R. Baumfalk, N.H. Nahler, U. Buck, M.Y. Niv and R.B. Gerber, Photodissociation of HBr adsorbed on the surface and embedded in large Arn clusters, J. Chem. Phys., 113, p329 (2000).
M.Y. Niv, A.I. Krylov, R.B. Gerber and U. Buck, Photodissociation of HCl adsorbed on Ar12 Cluster: Nonadiabatic Molecular Dynamics Simulations, J. Chem. Phys. 110, p11047 (1999).
M.Y. Niv, A.I. Krylov and R.B. Gerber, Photodissociation, Electronic Relaxation and Recombination of HCl in Arn(HCl) Clusters: Nonadiabatic Molecular Dynamics Simulations, Faraday Discussions 108, p243 (1997). |
