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Clustering: Clustering Tool


  • Jun 6 2014. Code is now available through GitHub.


Clustering is a VMD plugin to calculate and visualize clusters of conformations for a trajectory. Each conformation is color coded according to the cluster to which it belongs. This is done by creating one representation for each cluster, and setting the Draw Multiple frames variable to the corresponding frame numbers.

Features include:

Get Clustering

The latest code is now accesible through its GitHub repository. Contact the author if you need an old version.


Documentation can be found in the GitHub repository.


Luis Gracia, PhD
Weill Cornell Medical College
1300 York Ave, New York, 10065 NY

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