NEW: The ChIPseeqer paper is out and highlighted as

Olivier Elemento, PhD, Assistant Professor
Eugenia (Jenny) Giannopoulou, PhD, postdoctoral research associate.
Project: computational approaches for ChIP-seq data analysis, regulatory network inference and visualization
Yanwen Jiang, PhD, postdoctoral research associate.
Project: experimental/computational characterization of transcriptional networks in normal and malignant B cells
Ta-tsen (David) Soong, PhD, postdoctoral research associate.
Project: revealing cancer mutations using deep sequencing
Mark Carty, graduate student (Tri-I CBM program)
Project: graph-theoretical analysis of chromatin interactions in cancer
Matt Teater, graduate student (PBSB graduate program)
Project: CTCF-based regulation in normal and malignant cells
Yuheng Lu, rotation student (PBSB graduate program)
Project: cancer mutation detection using deep sequencing
David Kuo, rotation student (PBSB graduate program)
Project: discovering functional targets of transcription factors
Jan Dlabal, summer student (Lycee Francais)
Project: rich immersive and interactive visualization of 3D chromosome structure
Alicia Subtil-Rodriguez, visiting scientist (Centro Andaluz de BiologĂ­a Molecular y Medicina Regenerativa, Sevilla, Spain)
Project: ChIP-seq analysis of chromatin organizing proteins
Alex Ivanov, research scientist
Project: fundamental principles of drug resistance mutations
Former members:
Huimin Geng, PhD, postdoctoral research associate.
Project: the impact of DNA methylation on gene expression in normal B cells and lymphomas
Currently Assistant Professor at UCSF
Michal Novemsky, summer student (MS Computer Science, NYU)
Project: predicting drug sensitivity in lymphoma patients
Yogesh Saletore, rotation student (Tri-I CBM graduate program)
Project: detecting nucleosome relocalization in B cells
Sol Shenker, rotation student (Tri-I CBM graduate program)
Project: using computer vision to measure cancer cell phenotypes
Abishek M, rotation student (PBSB graduate program)
Project: 3D reconstruction of chromosome structur e
Hector Acaron, summer student (Biomedical Engineering, Cornell Ithaca)
Project: systems biology of endothelial cells
Irene Stevens, undergraduate student (Hunter College)
Project: cross-tissue and cross-cancer discovery and characterization of enhancer regions
Brandon Giglio, undergraduate student (Hunter College)
Project: discovering novel non-coding RNAs in B cells
Danica Chiu, rotation student (Pharmacology graduate program)
Project: decoding the enhancer regulatory code in B cells
Alex Root, rotation student (PBSB graduate program)
Project: detecting aberrant transcription factor activity in cancer cells
Kaiming Li, rotation student (BCMB Allied graduate program)
Project: detecting CNVs using deep sequencing data
Sheng Li, rotation student (PBSB graduate program)
Project: understanding EZH2 deregulation
Jaaved Mohammed, rotation student (Tri-I CBM graduate program)
Project: cancer mutation detection using deep sequencing
Sayan Mondal, rotation student (PBSB)
Project: predicting GPCR oligomerization using genomic data integration


Group meetings:
Group meetings are held every Thursday at 11am, in the ICB Conference room. We have joint lab meetings with Jason Mezey's group here at Weill.


Collaborators:
- Ari Melnick, WCMC, transcriptional networks and epigenetic mechanisms in normal and malignant B cells
- Shahin Rafii, WCMC, endothelial cell biology
- Thomas Fahey, WCMC/NYPH, thyroid cancer
- Tarun Kapoor, RU, cancer drug targets
- Scott Ely, WCMC, automated image analysis in multiple myeloma
- Jon Licht, Nothwestern U, Multiple Myeloma
- Mark Rubin, WCMC, prostate cancer
- David Lyden, WCMC, metastasis and exosome
- David Rickman, WCMC, chromatin interactions in prostate cancer
- Christina Leslie, MSKCC, miRNA activity in cancer
- Jason Banfelder, WCMC, 3D visualization of genomic data
- Tim McGraw, WCMC, metabolomics of cancer-associated fibroblasts