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ChIPseeqer
ChIPseeqer is a comprehensive computational framework for the analysis of ChIP sequencing data.
VIP software
VIP is an interactive tool for multidimensional visualization of proteomics data (2DGE-MS, LC-MS/MS).
POML - Proteomic Objects Markup Language
POML is an XML-based format for representing data from the various steps of a proteomics workflow and concern a large number of proteomic objects.