However, written permission must be obtained from the author to reprint, republish, advertising or promotional purposes or create new collective works for resale or redistribution. The same rules apply for any components or parts of this work.
Journals
[J6] E. G. Giannopoulou, O. Elemento, An integrated ChIP-seq analysis platform with customizable workflows. 2011. BMC Bioinformatics, 12:277. 
[J5] E. G. Giannopoulou, G. Lepouras, E. S. Manolakos, Visualizing Meta-Features in Proteomic Maps. 2011. BMC Bioinformatics. Accepted.
[J4] E. G. Giannopoulou, G. Lepouras, E. S. Manolakos, An interactive tool for visualizing jointly properties of proteomic objects, Cancer Genomics & Proteomics (2009) Vol. 6, No. 1.
[J3] E. G. Giannopoulou, S. D. Garbis, A. Vlahou, S. Kossida, G. Lepouras, E. S. Manolakos, Proteomic Feature Maps: A new visualization approach in proteomics analysis, Journal of Biomedical Informatics Journal of Biomedical Informatics, vol. 42, no. 4, pp 644-653, 2009. [online]
[J2] S. D. Garbis, S. I. Tyritzis, T. Roumeliotis, P. Zerefos, E. G. Giannopoulou, A. Vlahou, S. Kossida, J. Diaz, S. Vourekas, C. Tamvakopoulos, K. Pavlakis, D. Sanoudou, C. Constantinides, Search for potential markers for prostate cancer diagnosis, prognosis and treatment in clinical tissue specimens using amine-specific isobaric tagging (iTRAQ) with two-dimensional liquid chromatography and tandem mass spectrometry, Journal of Proteome Research (2008) Vol. 7, No. 8.
[pdf]
[J1] A. Katifori, C. Halatsis, G. Lepouras, C. Vassilakis, E. G. Giannopoulou, Ontology Visualization Methods - A Survey, ACM Computing Surveys (2007) Vol. 39, No. 4. [pdf]
Book Chapters
[B2] E. G. Giannopoulou, S. Kossida, Data Mining Applications in the Post-Genomic Era, in Eugenia G. Giannopoulou (Ed.), Data Mining in Medical and Biological Research , Vienna, Austria: IN-TECH, 2008.
[B1] E. G. Giannopoulou, A. Vlahou, S. Kossida, Proteomics, in Sofia Kossida (Ed.), Bioinformatics, Capabilities and Potentials, Athens, Greece, 2008 (in greek).
Conferences
[C6] E. G. Giannopoulou, G. Lepouras, E. Manolakos, VIP: Visualization of Integrated Proteomics Data, 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE '08), Athens, Greece, 2008. [pdf]
[C5] S. Ventoura, E. G. Giannopoulou, E. Manolakos, ProtCV: A Tool for Extracting, Visualizing and Validating Protein Clusters Using Mass Spectra Peak-Lists, 21st IEEE International Symposium on Computer Based Medical Systems (CBMS '08), Jyvaskyla, Finland, 2008. [pdf]
[C4] M. Golemati, A. Katifori, E. G. Giannopoulou, I. Daradimos, C. Vassilakis, G. Lepouras, C. Halatsis, An Interview-Based User Study on the use of Visualizations for Folder Browsing, 12th International Conference on Information Visualisation, London, UK, 2008. [pdf]
[C3] E. G. Giannopoulou, V. P. Kemerlis, M. Polemis, J. Papaparaskevas, A. C. Vatopoulos, M. Vazirgiannis, A Large Scale Data Mining Approach to Antibiotic Resistance Surveillance, 20th IEEE International Symposium on Computer Based Medical Systems (CBMS '07), Maribor, Slovenia, 2007. [pdf]
[C2] M. Golemati, A. Katifori, E. G. Giannopoulou, I. Daradimos, C. Vassilakis, Evaluating the Significance of the Windows Explorer Visualization in Personal Information Management Browsing tasks, 11th International Conference on Information Visualisation, Zurich, Switzerland, 2007. [pdf]
[C1] R. Stamatis, Giannopoulou E., Restrictions of cryptography in the modern economic activity, 2nd Student Conference of Management Science and Technology, Athens, Greece, 2004. [pdf] (in greek)
Posters
[P6] E. G. Giannopoulou, G. Lepouras, E. S. Manolakos, Joint Visualization of Proteomic Features, IEEE Information Visualization Conference 2008 (InfoVis 2008), Columbus, Ohio.
[P5] T. I. Roumeliotis, A. Keramidas, E. G. Giannopoulou, et al., Ex vivo pharmacoproteomic and toxicoproteomic tudy of ã-tocopherol in DU-145 prostate cancer cells using iTRAQ labeling with 2DLC-nESI-MS-MS, 56th ASMS conference on Mass Spectrometry (ASMS 2008), Denver, CO, USA .
[P4] S. D. Garbis, T. Roumeliotis, S. I. Tyritzis, K. Pavlakis, E. G. Giannopoulou, P. G. Zerefos, S. Kossida, A. Vlahou, S. Vourekas, C. Tamvakopoulos, J. Diaz, C. A. Constantinides, Online Multidimensional LC-LC-nESI-QqTOF-MS-MS Analysis for Novel Protein Biomarkers in Prostate Cancer Using Multi-Phasic Capillary Chromatographic Chemistries, 55th ASMS conference on Mass Spectrometry (ASMS 2007), Indianapolis, Indiana, USA. [pdf]
[P3] M. Halabalaki, T. Roumeliotis, X. Alexi, E. G. Giannopoulou, S. Kossida, L. Meijer, M. N. Alexis, A. Skaltsounis, S. D. Garbis, Ex vivo Pharmacoproteomics and Toxicoproteomic Evaluation of a Benzofuran Phytoalexin Isolated from Onobrychis ebenoides Using the DU-145 Prostate Cancer Cell Line, 55th ASMS conference on Mass Spectrometry (ASMS 2007), Indianapolis, Indiana, USA. [pdf]
[P2] S. D. Garbis, P. Zerefos, A. Papadopoulou, A. Vlahou, C. Tamvakopoulos, S. Tyritzis, S. Kossida, H. Diaz, S. Vourekas, K. Pavlakis, E. G. Giannopoulou, J. E. Meza, C. Constantinides, Quantitative proteomic approaches for the determination of carcinogenesis biomarkers in prostate tissue, 54th ASMS conference on Mass Spectrometry (ASMS 2006), Seattle, Washington, USA. [pdf]
[P1] S. D. Garbis, P. Zerefos, A. Papadopoulou, A. Vlahou, C. Tamvakopoulos, S. Kossida, E. G. Giannopoulou, J. Diaz, K. Pavlakis, S. Tyritzis, S. Vourekas, C. Constantinides, Search for carcinogenesis markers in prostate tissue using differentially labeled iTRAQ tags and gel electrophoresis techniques with multidimensional liquid chromatography and tandem mass spectrometry, The Athenian EuroAmerican Congress of Urology, Athens, Greece, 2006.