| Publications
A polymorphism in CALHM1 influences Ca2+ homeostasis, Abeta levels, and Alzheimer's disease risk. Dreses-Werringloer U, Lambert JC, Vingtdeux V, Zhao H, Vais H, Siebert A, Jain A, Koppel J, Rovelet-Lecrux A, Hannequin D, Pasquier F, Galimberti D, Scarpini E, Mann D, Lendon C, Campion D, Amouyel P, Davies P, Foskett JK, Campagne F, Marambaud P. Cell. 2008, 133:1149-61. [PubMed]
Beyond tissueInfo: functional prediction using tissue expression profile similarity searches. Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F. Nucleic Acids Res. 2008, 36:3728-37. [PubMed]
Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols. Fabien Campagne BMC Bioinformatics 2008, 9:132 [PubMed]
Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base. Lucy Skrabanek, Marta Murcia, Michel Bouvier, Lakshmi Devi, Susan R George, Martin J Lohse, Graeme Milligan, Richard Neubig, Krzysztof Palczewski, Marc Parmentier, Jean-Philippe Pin, Gerrit Vriend, Jonathan A Javitch, Fabien Campagne, Marta Filizola BMC Bioinformatics 2007, 8:177 [PubMed]
Gene expression profiling separates chromophobe renal cell carcinoma from oncocytoma and identifies vesicular transport and cell junction proteins as differentially expressed genes. Stephen Rohan, Jiangling J. Tu, Jean Kao, Piali Mukherjee, Fabien Campagne, Xi K. Zhou, Elizabeth Hyjek, Miguel A. Alonso, Yao-Tseng Chen. Clin. Cancer Res. 2006, 12: 6937-45 [PubMed]
Campagne F and Skrabanek L. Mining expressed sequence tags identifies cancer markers of clinical interest. BMC Bioinformatics. 2006, 7:481 [Abstract]
Hao G, Derakhshan B, Shi L, Campagne F, Gross SS. SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures.Proc Natl Acad Sci U S A. 2006, 103:1012-7. [PubMed]
Le Novere N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, Wanner BL. Minimum information requested in the annotation of biochemical models (MIRIAM). Nat Biotechnol. 2005, 12:1509-15. [PubMed]
Carter M, Chen X, Slowinska B, Minnerath S, Glickstein S, Shi L, Campagne F, Weinstein H, Ross ME. Crooked tail (Cd) model of human folate-responsive neural tube defects is mutated in Wnt coreceptor lipoprotein receptor-related protein 6. Proc Natl Acad Sci U S A. 2005 Aug 26:12843-48 [PubMed], [Full Text]
Palma M, Zurita J, Ferreras JA, Worgall S, Larone DH, Shi L, Campagne F, Quadri LE. Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response. Infect Immun. 2005 May;73(5):2958-66. [PubMed], [Full Text]
Shi L, Campagne F. Building a protein name dictionary from full text: a machine learning term extraction approach. BMC Bioinformatics. 2005 Apr 7;6(1):88. [PubMed], [Full Text]
Srdanovic M, Schenk U, Schwieger M, Campagne F. Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases. BMC Bioinformatics. 2005 Jan 10;6(1):5. [PubMed], [Full Text]
Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Quantitative information management for the biochemical computation of cellular networks. Sci STKE. 2004 248:PL11. [PubMed], [Full Text]
Campagne F, Bettler E., Vriend G., Weinstein H. Batch mode generation of residue-based diagrams of proteins. Bioinformatics 2003 19:1854-1855. [Abstract]
Skrabanek L, Campagne F, Weinstein H. Building protein diagrams on the web with the residue-based diagram editor RbDe. Nucleic Acids Res. 2003 Jul 1;31(13):3856-8. [PubMed]
Max M, Shanker YG, Huang L, Rong M, Liu Z, Campagne F, Weinstein H, Damak S, Margolskee RF. Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac. Nat Genet. 2001 May;28(1):58-63. [PubMed]
Campagne F. Clustalnet: the joining of Clustal and CORBA. Bioinformatics. 2000 Jul;16(7):606-12. [PubMed]
Skrabanek L and Campagne F. TissueInfo: high-throughput identification of tissue expression profiles and specificity. Nucleic Acids Res. 2001 29(21):e102 [PubMed], [Full Text]
Correspondences
Campagne F. Interoperability calls for an unusual mix of skills. Nature 2002 418: 125 [PubMed], [pdf file]
Book Chapters
Filizola M, Visiers I, Skrabanek L, Campagne F, Weinstein H. Functional mechanisms of GPCRs in a structural context. In Molecular Neuropharmacology, Strategies and Methods, Eds., A. Schousboe and H. Bräuner-Osborne, Humana Press. Dec. 2003
Posters
Campagne F and Weinstein H. Drivers for mutant databases in the RbDe Web Service: Design principles and implementation ISMB 2000, San Diego, CA
Campagne F. Sequence representation: a comparison of prototypes ISMB 2000, San Diego, CA [pdf file]
Campagne F, Skrabanek L, and Weinstein H. Applications of high- throughput identification of tissue expression profiles and specificity. ISMB 2001, Copenhagen, Denmark [pdf file]
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